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XYLT2 xylosyltransferase 2 [ Nothoprocta perdicaria ]

Gene ID: 112953742, updated on 15-Mar-2024

Summary

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Gene symbol
XYLT2
Gene description
xylosyltransferase 2
See related
Ensembl:ENSNPEG00000004890
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
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Genomic context

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See XYLT2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020455710.1 (2009406..2017297, complement)

NW_020455710.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L27 Neighboring gene uncharacterized LOC112953741 Neighboring gene CMRF35-like molecule 6 Neighboring gene CMRF35-like molecule 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020455710 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020455710.1 Reference notPer1

    Range
    2009406..2017297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026046846.1 → XP_025902631.1  xylosyltransferase 2

    UniProtKB/TrEMBL
    A0A8C6YWZ4
    Related
    ENSNPEP00000006470.1, ENSNPET00000006630.1
    Conserved Domains (3) summary
    pfam02485
    Location:211 → 463
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:496 → 674
    Xylo_C; Xylosyltransferase C terminal
    cl22974
    Location:62 → 160
    HpaP; Type III secretion protein (HpaP)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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