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CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 [ Nothoprocta perdicaria ]

Gene ID: 112953461, updated on 15-Mar-2024

Summary

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Gene symbol
CSGALNACT1
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
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Genomic context

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See CSGALNACT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020455695.1 (154925..181928, complement)

NW_020455695.1Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase like 2 Neighboring gene SH2 domain containing 4A Neighboring gene integrator complex subunit 10 Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020455695 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020455695.1 Reference notPer1

    Range
    154925..181928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026046511.1 → XP_025902296.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    cl11394
    Location:136 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_026046508.1 → XP_025902293.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    cl11394
    Location:136 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_026046507.1 → XP_025902292.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    cl11394
    Location:136 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_026046510.1 → XP_025902295.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    cl11394
    Location:136 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_026046512.1 → XP_025902297.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    cl11394
    Location:136 → 507
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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