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PYGB glycogen phosphorylase B [ Nothoprocta perdicaria ]

Gene ID: 112949359, updated on 15-Mar-2024

Summary

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Gene symbol
PYGB
Gene description
glycogen phosphorylase B
See related
Ensembl:ENSNPEG00000003627
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
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Genomic context

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See PYGB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020455522.1 (667739..681952)

NW_020455522.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112949329 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 6 Neighboring gene abhydrolase domain containing 12, lysophospholipase Neighboring gene testis-specific serine/threonine-protein kinase 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020455522 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen phosphorylase, brain form

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020455522.1 Reference notPer1

    Range
    667739..681952
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026041751.1 → XP_025897536.1  glycogen phosphorylase, brain form isoform X1

    UniProtKB/TrEMBL
    A0A8C7EA36
    Related
    ENSNPEP00000004768.1, ENSNPET00000004884.1
    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT1_Glycogen_Phosphorylase; This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of ...

  2. XM_026041752.1 → XP_025897537.1  glycogen phosphorylase, brain form isoform X2

    Conserved Domains (1) summary
    cd04300
    Location:29 → 656
    GT1_Glycogen_Phosphorylase; This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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