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DGCR2 DiGeorge syndrome critical region gene 2 [ Nothoprocta perdicaria ]

Gene ID: 112945844, updated on 15-Mar-2024

Summary

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Gene symbol
DGCR2
Gene description
DiGeorge syndrome critical region gene 2
See related
Ensembl:ENSNPEG00000009850
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothoprocta perdicaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta
Orthologs
human mouse all
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Genomic context

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See DGCR2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current notPer1 (GCF_003342845.1) Unplaced Scaffold NW_020455204.1 (2435678..2476081, complement)

NW_020455204.1Genomic Context describing neighboring genes Neighboring gene immunoglobulin lambda like polypeptide 1 Neighboring gene carbonic anhydrase 15-like Neighboring gene testis-specific serine/threonine-protein kinase 1-like Neighboring gene testis-specific serine/threonine-protein kinase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020455204 Unplaced Scaffold Reference notPer1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integral membrane protein DGCR2/IDD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nothoprocta perdicaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference notPer1

Genomic

  1. NW_020455204.1 Reference notPer1

    Range
    2435678..2476081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026037528.1 → XP_025893313.1  integral membrane protein DGCR2/IDD isoform X4

    UniProtKB/TrEMBL
    A0A8C7EDZ5
    Related
    ENSNPEP00000013203.1, ENSNPET00000013532.1
    Conserved Domains (4) summary
    cd03599
    Location:112 → 264
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:268 → 326
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl25397
    Location:436 → 532
    AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]

  2. XM_026037527.1 → XP_025893312.1  integral membrane protein DGCR2/IDD isoform X3

    UniProtKB/TrEMBL
    A0A8C7EDZ5
    Conserved Domains (4) summary
    cd03599
    Location:115 → 267
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:271 → 329
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl25397
    Location:439 → 535
    AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]

  3. XM_026037526.1 → XP_025893311.1  integral membrane protein DGCR2/IDD isoform X2

    UniProtKB/TrEMBL
    A0A8C7EDZ5
    Conserved Domains (4) summary
    cd03599
    Location:123 → 275
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:279 → 337
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:41 → 77
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl25397
    Location:447 → 543
    AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]

  4. XM_026037525.1 → XP_025893310.1  integral membrane protein DGCR2/IDD isoform X1

    UniProtKB/TrEMBL
    A0A8C7EDZ5
    Conserved Domains (4) summary
    cd03599
    Location:126 → 278
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:282 → 340
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:41 → 77
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl25397
    Location:450 → 546
    AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]
Nucleotide Protein
Heading Accession and Version

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