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SGMS2 sphingomyelin synthase 2 [ Vulpes vulpes (red fox) ]

Gene ID: 112934190, updated on 15-Mar-2024

Summary

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Gene symbol
SGMS2
Gene description
sphingomyelin synthase 2
See related
Ensembl:ENSVVUG00000017400
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See SGMS2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356572.1 (3302425..3434166)

NW_020356572.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112934196 Neighboring gene uncharacterized LOC112934195 Neighboring gene cytochrome P450 2U1 Neighboring gene hydroxyacyl-CoA dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356572 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356572.1 Reference VulVul2.2 Primary Assembly

    Range
    3302425..3434166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026017563.1 → XP_025873348.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A3Q7UJH1
    Conserved Domains (2) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
    cl27773
    Location:6 → 175
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain

  2. XM_026017566.1 → XP_025873351.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A3Q7UJH1
    Conserved Domains (2) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
    cl27773
    Location:6 → 175
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain

  3. XM_026017567.1 → XP_025873352.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A3Q7UJH1
    Conserved Domains (2) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
    cl27773
    Location:6 → 175
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain

  4. XM_026017564.1 → XP_025873349.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A3Q7UJH1
    Related
    ENSVVUP00000023739.1, ENSVVUT00000031406.1
    Conserved Domains (2) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
    cl27773
    Location:6 → 175
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain

  5. XM_026017565.1 → XP_025873350.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A3Q7UJH1
    Conserved Domains (2) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal
    cl27773
    Location:6 → 175
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain
Nucleotide Protein Strain
Heading Accession and Version

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