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NYX nyctalopin [ Vulpes vulpes (red fox) ]

Gene ID: 112929987, updated on 15-Mar-2024

Summary

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Gene symbol
NYX
Gene description
nyctalopin
See related
Ensembl:ENSVVUG00000011642
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See NYX in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356525.1 (4271697..4291940)

NW_020356525.1Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 3 X-linked Neighboring gene voltage-dependent anion-selective channel protein 3-like Neighboring gene calcium/calmodulin dependent serine protein kinase Neighboring gene G protein-coupled receptor 34 Neighboring gene G protein-coupled receptor 82

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356525 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nyctalopin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356525.1 Reference VulVul2.2 Primary Assembly

    Range
    4271697..4291940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026012227.1 → XP_025868012.1  nyctalopin isoform X1

    UniProtKB/TrEMBL
    A0A3Q7U3P7
    Related
    ENSVVUP00000015855.1, ENSVVUT00000020822.1
    Conserved Domains (5) summary
    smart00082
    Location:333 → 367
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:325 → 337
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:85 → 108
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:63 → 117
    LRR_8; Leucine rich repeat
    cl26161
    Location:70 → 314
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  2. XM_026012228.1 → XP_025868013.1  nyctalopin isoform X2

    UniProtKB/TrEMBL
    A0A3Q7TE01
    Conserved Domains (5) summary
    smart00082
    Location:332 → 366
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:324 → 336
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:84 → 107
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:62 → 116
    LRR_8; Leucine rich repeat
    cl26161
    Location:69 → 313
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

RNA

  1. XR_003237024.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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