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LPIN1 lipin 1 [ Vulpes vulpes (red fox) ]

Gene ID: 112927704, updated on 15-Mar-2024

Summary

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Gene symbol
LPIN1
Gene description
lipin 1
See related
Ensembl:ENSVVUG00000000949
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See LPIN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356511.1 (1100377..1199208, complement)

NW_020356511.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112927765 Neighboring gene uncharacterized LOC112927702 Neighboring gene neurotensin receptor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356511 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to insulin stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidate phosphatase LPIN1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356511.1 Reference VulVul2.2 Primary Assembly

    Range
    1100377..1199208 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026009088.1 → XP_025864873.1  phosphatidate phosphatase LPIN1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q7T651
    Conserved Domains (4) summary
    pfam04571
    Location:1 → 107
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:655 → 880
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam16876
    Location:467 → 540
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain
    cl28033
    Location:104 → 388
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_026009087.1 → XP_025864872.1  phosphatidate phosphatase LPIN1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7TUC8
    Related
    ENSVVUP00000001240.1, ENSVVUT00000001852.1
    Conserved Domains (4) summary
    pfam04571
    Location:1 → 107
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:665 → 890
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam16876
    Location:503 → 593
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain
    cl28033
    Location:226 → 424
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  3. XM_026009085.1 → XP_025864870.1  phosphatidate phosphatase LPIN1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7UBL4
    Conserved Domains (4) summary
    pfam04571
    Location:1 → 107
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:691 → 916
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam16876
    Location:503 → 576
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain
    cl28033
    Location:226 → 424
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  4. XM_026009089.1 → XP_025864874.1  phosphatidate phosphatase LPIN1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q7SQD8
    Related
    ENSVVUP00000001113.1, ENSVVUT00000001687.1
    Conserved Domains (4) summary
    pfam04571
    Location:1 → 107
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:629 → 854
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam16876
    Location:467 → 557
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain
    cl28033
    Location:104 → 388
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  5. XM_026009086.1 → XP_025864871.1  phosphatidate phosphatase LPIN1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7UBL4
    Conserved Domains (4) summary
    pfam04571
    Location:1 → 107
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:691 → 916
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam16876
    Location:503 → 576
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain
    cl28033
    Location:226 → 424
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
Nucleotide Protein Strain
Heading Accession and Version

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