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MTMR4 myotubularin related protein 4 [ Vulpes vulpes (red fox) ]

Gene ID: 112917923, updated on 15-Mar-2024

Summary

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Gene symbol
MTMR4
Gene description
myotubularin related protein 4
See related
Ensembl:ENSVVUG00000012608
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See MTMR4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356455.1 (11713450..11739794, complement)

NW_020356455.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 43 Neighboring gene heat shock transcription factor 5 Neighboring gene septin 4 Neighboring gene chromosome unknown C17orf47 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356455 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myotubularin-related protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356455.1 Reference VulVul2.2 Primary Assembly

    Range
    11713450..11739794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025996023.1 → XP_025851808.1  myotubularin-related protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A3Q7RY47
    Related
    ENSVVUP00000017102.1, ENSVVUT00000022524.1
    Conserved Domains (3) summary
    cd13342
    Location:23 → 136
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1111 → 1170
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    pfam06602
    Location:160 → 519
    Myotub-related; Myotubularin-like phosphatase domain

  2. XM_025996022.1 → XP_025851807.1  myotubularin-related protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A3Q7RY47
    Conserved Domains (3) summary
    cd13342
    Location:23 → 136
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1111 → 1170
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    pfam06602
    Location:160 → 519
    Myotub-related; Myotubularin-like phosphatase domain

  3. XM_025996024.1 → XP_025851809.1  myotubularin-related protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A3Q7RY47
    Conserved Domains (3) summary
    cd13342
    Location:23 → 136
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1111 → 1170
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    pfam06602
    Location:160 → 519
    Myotub-related; Myotubularin-like phosphatase domain

  4. XM_025996020.1 → XP_025851805.1  myotubularin-related protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7T9T4
    Conserved Domains (3) summary
    cd13342
    Location:37 → 150
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1125 → 1184
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    pfam06602
    Location:174 → 533
    Myotub-related; Myotubularin-like phosphatase domain

  5. XM_025996021.1 → XP_025851806.1  myotubularin-related protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7T9T4
    Conserved Domains (3) summary
    cd13342
    Location:37 → 150
    PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cd15733
    Location:1125 → 1184
    FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
    pfam06602
    Location:174 → 533
    Myotub-related; Myotubularin-like phosphatase domain
Nucleotide Protein Strain
Heading Accession and Version

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