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CNTN2 contactin 2 [ Vulpes vulpes (red fox) ]

Gene ID: 112914388, updated on 15-Mar-2024

Summary

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Gene symbol
CNTN2
Gene description
contactin 2
See related
Ensembl:ENSVVUG00000014833
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See CNTN2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356443.1 (19824682..19856497, complement)

NW_020356443.1Genomic Context describing neighboring genes Neighboring gene RB binding protein 5, histone lysine methyltransferase complex subunit Neighboring gene transmembrane protein 81 Neighboring gene neurofascin Neighboring gene uncharacterized protein C12orf31 homolog pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356443 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356443.1 Reference VulVul2.2 Primary Assembly

    Range
    19824682..19856497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025991396.1 → XP_025847181.1  contactin-2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7RYD5
    Related
    ENSVVUP00000020086.1, ENSVVUT00000026668.1
    Conserved Domains (6) summary
    cd05727
    Location:237 → 334
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd00063
    Location:921 → 1013
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04969
    Location:539 → 611
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:142 → 235
    Ig; Immunoglobulin domain
    cl21522
    Location:1021 → 1070
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl28033
    Location:3 → 139
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_025991397.1 → XP_025847182.1  contactin-2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7RMX8
    Conserved Domains (6) summary
    cd05727
    Location:173 → 270
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd00063
    Location:857 → 949
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04968
    Location:281 → 366
    Ig3_Contactin; Third immunoglobulin (Ig) domain of contactin
    cd04969
    Location:475 → 547
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:78 → 171
    Ig; Immunoglobulin domain
    cl21522
    Location:957 → 1006
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

RNA

  1. XR_003233859.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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