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SYNJ1 synaptojanin 1 [ Vulpes vulpes (red fox) ]

Gene ID: 112909278, updated on 15-Mar-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
Ensembl:ENSVVUG00000023125
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356639.1 (1553561..1645687)

NW_020356639.1Genomic Context describing neighboring genes Neighboring gene exosomal polycystin 1 interacting protein Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene U4 spliceosomal RNA Neighboring gene cilia and flagella associated protein 298 Neighboring gene eva-1 homolog C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356639 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356639.1 Reference VulVul2.2 Primary Assembly

    Range
    1553561..1645687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025985165.1 → XP_025840950.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7SGW3
    Conserved Domains (4) summary
    cd09098
    Location:536 → 871
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1036 → 1469
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:870 → 1011
    DUF1866; Domain of unknown function (DUF1866)

  2. XM_025985167.1 → XP_025840952.1  synaptojanin-1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q7R6F5
    Related
    ENSVVUP00000031809.1, ENSVVUT00000042223.1
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1028 → 1461
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:862 → 1003
    DUF1866; Domain of unknown function (DUF1866)

  3. XM_025985166.1 → XP_025840951.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7RFK5
    Conserved Domains (4) summary
    cd09098
    Location:533 → 868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:867 → 1008
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1033 → 1466
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:34 → 480
    Syja_N; SacI homology domain

  4. XM_025985169.1 → XP_025840954.1  synaptojanin-1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q7R3Y1
    Conserved Domains (4) summary
    cd09098
    Location:533 → 868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1033 → 1450
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:34 → 480
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:867 → 1008
    DUF1866; Domain of unknown function (DUF1866)

  5. XM_025985168.1 → XP_025840953.1  synaptojanin-1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q7R620
    Conserved Domains (4) summary
    cd09098
    Location:525 → 860
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:859 → 1000
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1025 → 1458
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:34 → 480
    Syja_N; SacI homology domain

  6. XM_025985170.1 → XP_025840955.1  synaptojanin-1 isoform X6

    UniProtKB/TrEMBL
    A0A3Q7SGW6
    Conserved Domains (4) summary
    cd09098
    Location:536 → 871
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1036 → 1311
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:870 → 1011
    DUF1866; Domain of unknown function (DUF1866)

  7. XM_025985171.1 → XP_025840956.1  synaptojanin-1 isoform X7

    UniProtKB/TrEMBL
    A0A3Q7RFL2
    Conserved Domains (4) summary
    cd09098
    Location:536 → 871
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1036 → 1312
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:34 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:870 → 1011
    DUF1866; Domain of unknown function (DUF1866)

  8. XM_025985174.1 → XP_025840959.1  synaptojanin-1 isoform X10

    UniProtKB/TrEMBL
    A0A3Q7R3Y6
    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam08952
    Location:862 → 1003
    DUF1866; Domain of unknown function (DUF1866)
    cl26464
    Location:1028 → 1303
    Atrophin-1; Atrophin-1 family
    cl27434
    Location:34 → 483
    Syja_N; SacI homology domain

  9. XM_025985172.1 → XP_025840957.1  synaptojanin-1 isoform X8

    UniProtKB/TrEMBL
    A0A3Q7R6G0
    Related
    ENSVVUP00000031841.1, ENSVVUT00000042254.1
    Conserved Domains (4) summary
    cd09098
    Location:533 → 868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1033 → 1308
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:34 → 480
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:867 → 1008
    DUF1866; Domain of unknown function (DUF1866)

  10. XM_025985173.1 → XP_025840958.1  synaptojanin-1 isoform X9

    UniProtKB/TrEMBL
    A0A3Q7R625
    Conserved Domains (4) summary
    cd09098
    Location:533 → 868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03378
    Location:972 → 1260
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:34 → 480
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:867 → 1008
    DUF1866; Domain of unknown function (DUF1866)
Nucleotide Protein Strain
Heading Accession and Version

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