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TARDBP TAR DNA binding protein [ Puma concolor (puma) ]

Gene ID: 112871779, updated on 15-Mar-2024

Summary

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Gene symbol
TARDBP
Gene description
TAR DNA binding protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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See TARDBP in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020338243.1 (7792773..7801580)

NW_020338243.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene peroxisomal biogenesis factor 14 Neighboring gene castor zinc finger 1 Neighboring gene MBL associated serine protease 2 Neighboring gene spermidine synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020338243 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TAR DNA-binding protein 43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020338243.1 Reference PumCon1.0 Primary Assembly

    Range
    7792773..7801580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025934818.1 → XP_025790603.1  TAR DNA-binding protein 43 isoform X1

    UniProtKB/TrEMBL
    A0A6P6IUN5
    Conserved Domains (3) summary
    pfam18694
    Location:4 → 77
    TDP43_N; Transactive response DNA-binding protein N-terminal domain
    cd12321
    Location:105 → 178
    RRM1_TDP43; RNA recognition motif 1 (RRM1) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins
    cd12322
    Location:191 → 261
    RRM2_TDP43; RNA recognition motif 2 (RRM2) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins

  2. XM_025934819.1 → XP_025790604.1  TAR DNA-binding protein 43 isoform X2

    UniProtKB/TrEMBL
    A0A6P6IS17
    Conserved Domains (3) summary
    pfam18694
    Location:4 → 77
    TDP43_N; Transactive response DNA-binding protein N-terminal domain
    cd12321
    Location:105 → 178
    RRM1_TDP43; RNA recognition motif 1 (RRM1) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins
    cd12322
    Location:191 → 261
    RRM2_TDP43; RNA recognition motif 2 (RRM2) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins

RNA

  1. XR_003224629.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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