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LOC112870715 nuclear RNA export factor 2-like [ Puma concolor (puma) ]

Gene ID: 112870715, updated on 9-Nov-2023

Summary

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Gene symbol
LOC112870715
Gene description
nuclear RNA export factor 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
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Genomic context

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See LOC112870715 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020340090.1 (47975116..47993800)

NW_020340090.1Genomic Context describing neighboring genes Neighboring gene nuclear RNA export factor 2-like Neighboring gene T-complex protein 11 X-linked protein 2-like Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene aspartate aminotransferase, mitochondrial pseudogene Neighboring gene armadillo repeat containing X-linked 5 Neighboring gene G protein-coupled receptor associated sorting protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020340090 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: nuclear RNA export factor 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020340090.1 Reference PumCon1.0 Primary Assembly

    Range
    47975116..47993800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025933802.1 → XP_025789587.1  LOW QUALITY PROTEIN: nuclear RNA export factor 2-like

    UniProtKB/TrEMBL
    A0A6P6INA9
    Conserved Domains (3) summary
    smart00804
    Location:418 → 475
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:122 → 168
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:9 → 85
    Tap-RNA_bind; Tap, RNA-binding
Nucleotide Protein
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