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PSMD9 proteasome 26S subunit, non-ATPase 9 [ Puma concolor (puma) ]

Gene ID: 112870279, updated on 15-Mar-2024

Summary

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Gene symbol
PSMD9
Gene description
proteasome 26S subunit, non-ATPase 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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See PSMD9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020340053.1 (22551112..22570574)

NW_020340053.1Genomic Context describing neighboring genes Neighboring gene SET domain containing 1B, histone lysine methyltransferase Neighboring gene 4-hydroxyphenylpyruvate dioxygenase Neighboring gene cilia and flagella associated protein 251 Neighboring gene BAF chromatin remodeling complex subunit BCL7A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020340053 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome regulatory particle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020340053.1 Reference PumCon1.0 Primary Assembly

    Range
    22551112..22570574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025933413.1 → XP_025789198.1  26S proteasome non-ATPase regulatory subunit 9 isoform X1

    UniProtKB/TrEMBL
    A0A6P6IQN4
    Conserved Domains (1) summary
    cd00989
    Location:133 → 205
    PDZ_metalloprotease; PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ ...

  2. XM_025933414.1 → XP_025789199.1  26S proteasome non-ATPase regulatory subunit 9 isoform X2

    UniProtKB/TrEMBL
    A0A6P6IMW7
    Conserved Domains (1) summary
    cl00117
    Location:45 → 100
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
Nucleotide Protein
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