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NUP98 nucleoporin 98 and 96 precursor [ Puma concolor (puma) ]

Gene ID: 112865263, updated on 15-Mar-2024

Summary

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Gene symbol
NUP98
Gene description
nucleoporin 98 and 96 precursor
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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See NUP98 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339798.1 (44104648..44167249)

NW_020339798.1Genomic Context describing neighboring genes Neighboring gene post-GPI attachment to proteins 2 Neighboring gene ras homolog family member G Neighboring gene cholinergic receptor nicotinic alpha 10 subunit Neighboring gene ADP-ribosyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020339798 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore cytoplasmic filaments IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear pore complex protein Nup98-Nup96

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339798.1 Reference PumCon1.0 Primary Assembly

    Range
    44104648..44167249
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025928302.1 → XP_025784087.1  nuclear pore complex protein Nup98-Nup96 isoform X1

    UniProtKB/TrEMBL
    A0A6P6I7H4
    Conserved Domains (3) summary
    pfam04096
    Location:740 → 879
    Nucleoporin2; Nucleoporin autopeptidase
    pfam13634
    Location:239 → 332
    Nucleoporin_FG; Nucleoporin FG repeat region
    cl25599
    Location:33 → 283
    Nucleoporin_FG2; Nucleoporin FG repeated region

  2. XM_025928303.1 → XP_025784088.1  nuclear pore complex protein Nup98-Nup96 isoform X2

    UniProtKB/TrEMBL
    A0A6P6IAJ9
    Conserved Domains (3) summary
    pfam04096
    Location:723 → 862
    Nucleoporin2; Nucleoporin autopeptidase
    pfam13634
    Location:239 → 332
    Nucleoporin_FG; Nucleoporin FG repeat region
    cl25599
    Location:33 → 283
    Nucleoporin_FG2; Nucleoporin FG repeated region
Nucleotide Protein
Heading Accession and Version

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