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LOC112865165 caspase-12-like [ Puma concolor (puma) ]

Gene ID: 112865165, updated on 9-Nov-2023

Summary

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Gene symbol
LOC112865165
Gene description
caspase-12-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
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Genomic context

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See LOC112865165 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339798.1 (101421449..101440568)

NW_020339798.1Genomic Context describing neighboring genes Neighboring gene 60 kDa heat shock protein, mitochondrial-like Neighboring gene caspase-1 Neighboring gene U1 spliceosomal RNA Neighboring gene DNA damage inducible 1 homolog 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020339798 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caspase-12-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339798.1 Reference PumCon1.0 Primary Assembly

    Range
    101421449..101440568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025928206.1 → XP_025783991.1  caspase-12-like

    UniProtKB/TrEMBL
    A0A6P6I748
    Conserved Domains (3) summary
    smart00115
    Location:272 → 522
    CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues
    cd08325
    Location:138 → 220
    CARD_CASP1-like; Caspase activation and recruitment domain found in Caspase-1 and related proteins
    cl14633
    Location:1 → 71
    DD; Death Domain Superfamily of protein-protein interaction domains
Nucleotide Protein
Heading Accession and Version

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