U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AMBRA1 autophagy and beclin 1 regulator 1 [ Puma concolor (puma) ]

Gene ID: 112865154, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
AMBRA1
Gene description
autophagy and beclin 1 regulator 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See AMBRA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339798.1 (5013787..5171854)

NW_020339798.1Genomic Context describing neighboring genes Neighboring gene autophagy related 13 Neighboring gene harbinger transposase derived 1 Neighboring gene U6 spliceosomal RNA Neighboring gene cholinergic receptor muscarinic 4 Neighboring gene diacylglycerol kinase zeta

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020339798 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
activating molecule in BECN1-regulated autophagy protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339798.1 Reference PumCon1.0 Primary Assembly

    Range
    5013787..5171854
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025928194.1 → XP_025783979.1  activating molecule in BECN1-regulated autophagy protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P6I853
    Conserved Domains (2) summary
    sd00039
    Location:56 → 92
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:59 → 198
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_025928195.1 → XP_025783980.1  activating molecule in BECN1-regulated autophagy protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P6I7C1
    Conserved Domains (2) summary
    sd00039
    Location:56 → 92
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:59 → 198
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_025928196.1 → XP_025783981.1  activating molecule in BECN1-regulated autophagy protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P6I735
    Conserved Domains (2) summary
    sd00039
    Location:56 → 92
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:59 → 198
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.