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PSMC5 proteasome 26S subunit, ATPase 5 [ Puma concolor (puma) ]

Gene ID: 112864552, updated on 15-Mar-2024

Summary

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Gene symbol
PSMC5
Gene description
proteasome 26S subunit, ATPase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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See PSMC5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339647.1 (1359938..1364201)

NW_020339647.1Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 42 Neighboring gene FtsJ RNA 2'-O-methyltransferase 3 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D2 Neighboring gene intercellular adhesion molecule 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020339647 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proteasome-activating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome regulatory subunit 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339647.1 Reference PumCon1.0 Primary Assembly

    Range
    1359938..1364201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025927574.1 → XP_025783359.1  26S proteasome regulatory subunit 8 isoform X1

    UniProtKB/TrEMBL
    A0A6P6I6G2
    Conserved Domains (1) summary
    COG1222
    Location:50 → 445
    RPT1; ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

  2. XM_025927575.1 → XP_025783360.1  26S proteasome regulatory subunit 8 isoform X2

    UniProtKB/TrEMBL
    A0A6P6I5H2
    Conserved Domains (1) summary
    COG1222
    Location:4 → 404
    RPT1; ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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