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ATF4 activating transcription factor 4 [ Puma concolor (puma) ]

Gene ID: 112863930, updated on 15-Mar-2024

Summary

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Gene symbol
ATF4
Gene description
activating transcription factor 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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See ATF4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339594.1 (60699763..60701915, complement)

NW_020339594.1Genomic Context describing neighboring genes Neighboring gene dynactin subunit 1 pseudogene Neighboring gene ribosomal protein S19 binding protein 1 Neighboring gene mitochondrial elongation factor 1 Neighboring gene TGF-beta activated kinase 1 (MAP3K7) binding protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020339594 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ATF1-ATF4 transcription factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ATF4-CREB1 transcription factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339594.1 Reference PumCon1.0 Primary Assembly

    Range
    60699763..60701915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025927039.1 → XP_025782824.1  cyclic AMP-dependent transcription factor ATF-4

    UniProtKB/TrEMBL
    A0A6P6I4X7
    Conserved Domains (1) summary
    cd14692
    Location:280 → 342
    bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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