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LOC112858853 toll-like receptor 2 [ Puma concolor (puma) ]

Gene ID: 112858853, updated on 9-Nov-2023

Summary

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Gene symbol
LOC112858853
Gene description
toll-like receptor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
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Genomic context

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See LOC112858853 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339223.1 (133760638..133771506)

NW_020339223.1Genomic Context describing neighboring genes Neighboring gene transmembrane 131 like Neighboring gene toll-like receptor 2 Neighboring gene ring finger protein 175 Neighboring gene dachsous cadherin-related 2 Neighboring gene U1 small nuclear ribonucleoprotein C pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020339223 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339223.1 Reference PumCon1.0 Primary Assembly

    Range
    133760638..133771506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025922218.1 → XP_025778003.1  toll-like receptor 2

    UniProtKB/TrEMBL
    A0A6P6HRZ9
    Conserved Domains (5) summary
    smart00255
    Location:571 → 658
    TIR; Toll - interleukin 1 - resistance
    sd00033
    Location:54 → 77
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:77 → 135
    LRR_8; Leucine rich repeat
    cl26018
    Location:327 → 558
    NEL; C-terminal novel E3 ligase, LRR-interacting
    cl26793
    Location:39 → 113
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
Nucleotide Protein
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