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ATXN2L ataxin 2 like [ Puma concolor (puma) ]

Gene ID: 112856450, updated on 15-Mar-2024

Summary

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Gene symbol
ATXN2L
Gene description
ataxin 2 like
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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See ATXN2L in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020338094.1 (1908985..1920926)

NW_020338094.1Genomic Context describing neighboring genes Neighboring gene CLN3 lysosomal/endosomal transmembrane protein, battenin Neighboring gene eukaryotic translation initiation factor 3 subunit C Neighboring gene Tu translation elongation factor, mitochondrial Neighboring gene SH2B adaptor protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020338094 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020338094.1 Reference PumCon1.0 Primary Assembly

    Range
    1908985..1920926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025920014.1 → XP_025775799.1  ataxin-2-like protein

    UniProtKB/TrEMBL
    A0A6P6HJ52
    Conserved Domains (4) summary
    pfam06741
    Location:264 → 326
    LsmAD; LsmAD domain
    pfam14438
    Location:123 → 196
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:795 → 957
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:336 → 870
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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