U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATG2B autophagy related 2B [ Puma concolor (puma) ]

Gene ID: 112855877, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ATG2B
Gene description
autophagy related 2B
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ATG2B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
42
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339215.1 (143997414..144058089, complement)

NW_020339215.1Genomic Context describing neighboring genes Neighboring gene bradykinin receptor B2 Neighboring gene bradykinin receptor B1 Neighboring gene GSK3B interacting protein Neighboring gene adenylate kinase 7

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020339215 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reticulophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
autophagy-related protein 2 homolog B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339215.1 Reference PumCon1.0 Primary Assembly

    Range
    143997414..144058089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025919396.1 → XP_025775181.1  autophagy-related protein 2 homolog B

    UniProtKB/TrEMBL
    A0A6P6HIM3
    Conserved Domains (3) summary
    pfam09333
    Location:1934 → 2028
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:13 → 61
    Chorein_N; N-terminal region of Chorein or VPS13
    cl25572
    Location:13 → 189
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.