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PGAP3 post-GPI attachment to proteins phospholipase 3 [ Puma concolor (puma) ]

Gene ID: 112854128, updated on 15-Mar-2024

Summary

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Gene symbol
PGAP3
Gene description
post-GPI attachment to proteins phospholipase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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See PGAP3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339135.1 (4444567..4457231)

NW_020339135.1Genomic Context describing neighboring genes Neighboring gene migration and invasion enhancer 1 Neighboring gene erb-b2 receptor tyrosine kinase 2 Neighboring gene titin-cap Neighboring gene StAR related lipid transfer domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020339135 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
post-GPI attachment to proteins factor 3
Names
post-GPI attachment to proteins 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339135.1 Reference PumCon1.0 Primary Assembly

    Range
    4444567..4457231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025917589.1 → XP_025773374.1  post-GPI attachment to proteins factor 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P6HC90
    Conserved Domains (1) summary
    pfam04080
    Location:54 → 305
    Per1; Per1-like family

  2. XM_025917592.1 → XP_025773377.1  post-GPI attachment to proteins factor 3 isoform X4

    UniProtKB/TrEMBL
    A0A6P6HCC6
    Conserved Domains (1) summary
    cl02172
    Location:54 → 185
    Per1; Per1-like

  3. XM_025917590.1 → XP_025773375.1  post-GPI attachment to proteins factor 3 isoform X2

    UniProtKB/TrEMBL
    A0A6P6HC86
    Conserved Domains (1) summary
    cl02172
    Location:54 → 285
    Per1; Per1-like

  4. XM_025917593.1 → XP_025773378.1  post-GPI attachment to proteins factor 3 isoform X5

    UniProtKB/TrEMBL
    A0A6P6HCX0
    Conserved Domains (1) summary
    cl02172
    Location:54 → 164
    Per1; Per1-like

  5. XM_025917591.1 → XP_025773376.1  post-GPI attachment to proteins factor 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P6HDM9
    Conserved Domains (1) summary
    pfam04080
    Location:54 → 254
    Per1; Per1-like family
Nucleotide Protein
Heading Accession and Version

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