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LGALS9 galectin 9 [ Puma concolor (puma) ]

Gene ID: 112853130, updated on 15-Mar-2024

Summary

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Gene symbol
LGALS9
Gene description
galectin 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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See LGALS9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020337979.1 (5796463..5812953, complement)

NW_020337979.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene nitric oxide synthase 2 Neighboring gene kinase suppressor of ras 1 Neighboring gene WD repeat and SOCS box containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020337979 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of CD4-positive, alpha-beta T cell proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of type II interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galectin-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020337979.1 Reference PumCon1.0 Primary Assembly

    Range
    5796463..5812953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025916660.1 → XP_025772445.1  galectin-9 isoform X1

    UniProtKB/TrEMBL
    A0A6P6H9L2
    Conserved Domains (1) summary
    smart00908
    Location:231 → 353
    Gal-bind_lectin; Galactoside-binding lectin

  2. XM_025916667.1 → XP_025772452.1  galectin-9 isoform X2

    UniProtKB/TrEMBL
    A0A6P6H9S0
    Conserved Domains (1) summary
    smart00908
    Location:237 → 359
    Gal-bind_lectin; Galactoside-binding lectin
Nucleotide Protein
Heading Accession and Version

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