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LOC112802560 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [ Arachis hypogaea (peanut) ]

Gene ID: 112802560, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112802560
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112802560 in Genome Data Viewer
Location:
chromosome: Arahy.05
Exon count:
7
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.05 NC_037622.1 (107456111..107462372)

Chromosome Arahy.05 - NC_037622.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 18 Neighboring gene spermidine synthase 2 Neighboring gene uncharacterized LOC112802561 Neighboring gene uncharacterized LOC112802562

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037622.1 Chromosome Arahy.05 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037622.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    107456111..107462372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025845826.2 → XP_025701611.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A445D0K8
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 845
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. XM_025845824.2 → XP_025701609.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A445D0K8
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 845
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  3. XM_025845825.2 → XP_025701610.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A445D0K8
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 845
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
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