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LOC112795916 soluble starch synthase 3, chloroplastic/amyloplastic [ Arachis hypogaea (peanut) ]

Gene ID: 112795916, updated on 18-Sep-2024

Summary

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Gene symbol
LOC112795916
Gene description
soluble starch synthase 3, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112795916 in Genome Data Viewer
Location:
chromosome: Arahy.04
Exon count:
17
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.04 NC_037621.1 (4878420..4885580)

Chromosome Arahy.04 - NC_037621.1Genomic Context describing neighboring genes Neighboring gene ATP synthase gamma chain, chloroplastic Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene uncharacterized LOC112795917 Neighboring gene uncharacterized LOC112794164 Neighboring gene autophagy-related protein 8C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037621.1 Chromosome Arahy.04 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 3, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037621.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    4878420..4885580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025838127.2 → XP_025693912.1  soluble starch synthase 3, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A445DJP3
    Conserved Domains (1) summary
    PLN02316
    Location:58 → 1081
    PLN02316; synthase/transferase

  2. XM_025838128.2 → XP_025693913.1  soluble starch synthase 3, chloroplastic/amyloplastic isoform X2

    Conserved Domains (1) summary
    cl28204
    Location:1 → 794
    GlgA; Glycogen synthase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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