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LOC112792687 glucan endo-1,3-beta-glucosidase 4 [ Arachis hypogaea (peanut) ]

Gene ID: 112792687, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112792687
Gene description
glucan endo-1,3-beta-glucosidase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112792687 in Genome Data Viewer
Location:
chromosome: Arahy.03
Exon count:
6
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.03 NC_037620.1 (142802113..142805836, complement)

Chromosome Arahy.03 - NC_037620.1Genomic Context describing neighboring genes Neighboring gene constitutive photomorphogenesis protein 10 Neighboring gene uncharacterized LOC112792686 Neighboring gene uncharacterized LOC112792685 Neighboring gene 60S ribosomal protein L32-1 Neighboring gene small nucleolar RNA U31b Neighboring gene small nucleolar RNA U31b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037620.1 Chromosome Arahy.03 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037620.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    142802113..142805836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025836011.2 → XP_025691796.1  glucan endo-1,3-beta-glucosidase 4

    UniProtKB/TrEMBL
    A0A444ZRR2
    Conserved Domains (2) summary
    smart00768
    Location:366 → 450
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:31 → 350
    Glyco_hydro_1; Glycosyl hydrolase family 1

  2. XM_025836012.2 → XP_025691797.1  glucan endo-1,3-beta-glucosidase 4

    UniProtKB/TrEMBL
    A0A444ZRR2
    Conserved Domains (2) summary
    smart00768
    Location:366 → 450
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:31 → 350
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
Heading Accession and Version

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