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LOC112791957 rhamnogalacturonan I rhamnosyltransferase 1 [ Arachis hypogaea (peanut) ]

Gene ID: 112791957, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112791957
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112791957 in Genome Data Viewer
Location:
chromosome: Arahy.03
Exon count:
9
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.03 NC_037620.1 (135283400..135287329, complement)

Chromosome Arahy.03 - NC_037620.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112791954 Neighboring gene uncharacterized LOC112791956 Neighboring gene phosphate transporter PHO1 homolog 3 Neighboring gene ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic Neighboring gene uncharacterized LOC112783269 Neighboring gene transmembrane emp24 domain-containing protein p24delta9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037620.1 Chromosome Arahy.03 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037620.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    135283400..135287329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025835016.2 → XP_025690801.1  rhamnogalacturonan I rhamnosyltransferase 1

    UniProtKB/TrEMBL
    A0A444ZUK5
    Conserved Domains (1) summary
    cd11299
    Location:96 → 420
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
Nucleotide Protein
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