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LOC112772839 callose synthase 12 [ Arachis hypogaea (peanut) ]

Gene ID: 112772839, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112772839
Gene description
callose synthase 12
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112772839 in Genome Data Viewer
Location:
chromosome: Arahy.18
Exon count:
4
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.18 NC_037635.1 (10673852..10680312)

Chromosome Arahy.18 - NC_037635.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112771743 Neighboring gene uncharacterized LOC112771459 Neighboring gene small nucleolar RNA J33 Neighboring gene two pore calcium channel protein 1 Neighboring gene uncharacterized LOC112770938 Neighboring gene mannan endo-1,4-beta-mannosidase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037635.1 Chromosome Arahy.18 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037635.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    10673852..10680312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025817844.2 → XP_025673629.1  callose synthase 12

    UniProtKB/TrEMBL
    A0A444Y6G3
    Conserved Domains (2) summary
    pfam02364
    Location:856 → 1619
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:146 → 252
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

RNA

  1. XR_003815392.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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