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LOC112771028 galactoside 2-alpha-L-fucosyltransferase [ Arachis hypogaea (peanut) ]

Gene ID: 112771028, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112771028
Gene description
galactoside 2-alpha-L-fucosyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112771028 in Genome Data Viewer
Location:
chromosome: Arahy.18
Exon count:
5
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.18 NC_037635.1 (156842..161682, complement)

Chromosome Arahy.18 - NC_037635.1Genomic Context describing neighboring genes Neighboring gene lamin-like protein Neighboring gene putative receptor-like protein kinase At1g80870 Neighboring gene putative cyclic nucleotide-gated ion channel 8 Neighboring gene uncharacterized LOC112769324

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037635.1 Chromosome Arahy.18 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactoside 2-alpha-L-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactoside 2-alpha-L-fucosyltransferase; probable fucosyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037635.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    156842..161682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029295104.1 → XP_029150937.1  probable fucosyltransferase 8 isoform X4

    Conserved Domains (1) summary
    cl16914
    Location:127 → 559
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  2. XM_029295102.1 → XP_029150935.1  probable fucosyltransferase 8 isoform X2

    Conserved Domains (1) summary
    cl16914
    Location:130 → 562
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  3. XM_029295107.1 → XP_029150940.1  galactoside 2-alpha-L-fucosyltransferase isoform X6

    Conserved Domains (1) summary
    cl16914
    Location:47 → 479
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  4. XM_029295103.1 → XP_029150936.1  probable fucosyltransferase 8 isoform X3

    Conserved Domains (1) summary
    cl16914
    Location:130 → 562
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  5. XM_029295105.1 → XP_029150938.1  galactoside 2-alpha-L-fucosyltransferase isoform X5

    Conserved Domains (1) summary
    cl16914
    Location:50 → 482
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  6. XM_029295106.1 → XP_029150939.1  galactoside 2-alpha-L-fucosyltransferase isoform X5

    Conserved Domains (1) summary
    cl16914
    Location:50 → 482
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  7. XM_029295101.1 → XP_029150934.1  probable fucosyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A445CIS2
    Conserved Domains (1) summary
    cl16914
    Location:133 → 565
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  8. XM_025815584.2 → XP_025671369.1  probable fucosyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A445CIS2
    Conserved Domains (1) summary
    cl16914
    Location:133 → 565
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  9. XM_025815583.2 → XP_025671368.1  probable fucosyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A445CIS2
    Conserved Domains (1) summary
    cl16914
    Location:133 → 565
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  10. XM_025815579.2 → XP_025671364.1  probable fucosyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A445CIS2
    Conserved Domains (1) summary
    cl16914
    Location:133 → 565
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  11. XM_025815582.2 → XP_025671367.1  probable fucosyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A445CIS2
    Conserved Domains (1) summary
    cl16914
    Location:133 → 565
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  12. XM_029295098.1 → XP_029150931.1  probable fucosyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A445CIS2
    Conserved Domains (1) summary
    cl16914
    Location:133 → 565
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  13. XM_029295100.1 → XP_029150933.1  probable fucosyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A445CIS2
    Conserved Domains (1) summary
    cl16914
    Location:133 → 565
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  14. XM_029295097.1 → XP_029150930.1  probable fucosyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A445CIS2
    Conserved Domains (1) summary
    cl16914
    Location:133 → 565
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

  15. XM_029295099.1 → XP_029150932.1  probable fucosyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A445CIS2
    Conserved Domains (1) summary
    cl16914
    Location:133 → 565
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins
Nucleotide Protein
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