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LOC112770804 cellulose synthase A catalytic subunit 1 [UDP-forming] [ Arachis hypogaea (peanut) ]

Gene ID: 112770804, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112770804
Gene description
cellulose synthase A catalytic subunit 1 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112770804 in Genome Data Viewer
Location:
chromosome: Arahy.18
Exon count:
14
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.18 NC_037635.1 (129769136..129775632, complement)

Chromosome Arahy.18 - NC_037635.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At3g23880-like Neighboring gene F-box/kelch-repeat protein At3g23880 Neighboring gene protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 Neighboring gene adenine nucleotide transporter BT1, chloroplastic/mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037635.1 Chromosome Arahy.18 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut. Nagy ED, et al. BMC Genomics, 2012 Sep 11. PMID 22967170, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 1 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037635.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    129769136..129775632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025815211.2 → XP_025670996.1  cellulose synthase A catalytic subunit 1 [UDP-forming]

    UniProtKB/TrEMBL
    A0A444XXW7
    Conserved Domains (1) summary
    PLN02400
    Location:1 → 1083
    PLN02400; cellulose synthase
Nucleotide Protein
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