U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC112766883 probable trehalose-phosphate phosphatase J [ Arachis hypogaea (peanut) ]

Gene ID: 112766883, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC112766883
Gene description
probable trehalose-phosphate phosphatase J
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC112766883 in Genome Data Viewer
Location:
chromosome: Arahy.17
Exon count:
10
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.17 NC_037634.1 (129341223..129343458, complement)

Chromosome Arahy.17 - NC_037634.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112763941 Neighboring gene uncharacterized LOC112763942 Neighboring gene protein SQS1 Neighboring gene inactive TPR repeat-containing thioredoxin TTL3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037634.1 Chromosome Arahy.17 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables trehalose-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable trehalose-phosphate phosphatase 4; probable trehalose-phosphate phosphatase J

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037634.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    129341223..129343458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025812787.2 → XP_025668572.1  probable trehalose-phosphate phosphatase J isoform X2

    UniProtKB/TrEMBL
    A0A445C9T8
    Conserved Domains (1) summary
    cl21460
    Location:32 → 347
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_025812786.2 → XP_025668571.1  probable trehalose-phosphate phosphatase 4 isoform X1

    Conserved Domains (1) summary
    cl21460
    Location:32 → 380
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases