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LOC112766657 probable trehalose-phosphate phosphatase 2 [ Arachis hypogaea (peanut) ]

Gene ID: 112766657, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112766657
Gene description
probable trehalose-phosphate phosphatase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112766657 in Genome Data Viewer
Location:
chromosome: Arahy.17
Exon count:
11
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.17 NC_037634.1 (123038015..123048718)

Chromosome Arahy.17 - NC_037634.1Genomic Context describing neighboring genes Neighboring gene dehydrogenase/reductase SDR family member on chromosome X Neighboring gene uncharacterized LOC112766197 Neighboring gene uncharacterized LOC114925717 Neighboring gene uncharacterized LOC112766505

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037634.1 Chromosome Arahy.17 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables trehalose-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable trehalose-phosphate phosphatase 2; probable trehalose-phosphate phosphatase C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037634.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    123038015..123048718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025812554.2 → XP_025668339.1  probable trehalose-phosphate phosphatase C isoform X1

    UniProtKB/TrEMBL
    A0A445CAR7
    Conserved Domains (1) summary
    PLN02580
    Location:46 → 367
    PLN02580; trehalose-phosphatase

  2. XM_025812553.2 → XP_025668338.1  probable trehalose-phosphate phosphatase C isoform X1

    UniProtKB/TrEMBL
    A0A445CAR7
    Conserved Domains (1) summary
    PLN02580
    Location:46 → 367
    PLN02580; trehalose-phosphatase

  3. XM_025812555.2 → XP_025668340.1  probable trehalose-phosphate phosphatase 2 isoform X2

    Conserved Domains (1) summary
    cl28591
    Location:22 → 343
    OtsB; Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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