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LOC112755689 cellulose synthase A catalytic subunit 1 [UDP-forming] [ Arachis hypogaea (peanut) ]

Gene ID: 112755689, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112755689
Gene description
cellulose synthase A catalytic subunit 1 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112755689 in Genome Data Viewer
Location:
chromosome: Arahy.16
Exon count:
14
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.16 NC_037633.1 (146850637..146858668)

Chromosome Arahy.16 - NC_037633.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase CYP95 Neighboring gene protein tesmin/TSO1-like CXC 2 Neighboring gene GDP-fucose transporter 1-like Neighboring gene uncharacterized LOC112755692

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037633.1 Chromosome Arahy.16 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 1 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037633.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    146850637..146858668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025803941.2 → XP_025659726.1  cellulose synthase A catalytic subunit 1 [UDP-forming]

    UniProtKB/TrEMBL
    A0A445CW46
    Conserved Domains (1) summary
    PLN02400
    Location:1 → 1079
    PLN02400; cellulose synthase
Nucleotide Protein
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