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LOC112749802 cellulose synthase-like protein D3 [ Arachis hypogaea (peanut) ]

Gene ID: 112749802, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112749802
Gene description
cellulose synthase-like protein D3
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112749802 in Genome Data Viewer
Location:
chromosome: Arahy.15
Exon count:
5
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.15 NC_037632.1 (18745836..18751139, complement)

Chromosome Arahy.15 - NC_037632.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene 60S ribosomal protein L6, mitochondrial Neighboring gene TOM1-like protein 1 Neighboring gene uncharacterized LOC112748035

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037632.1 Chromosome Arahy.15 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037632.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    18745836..18751139 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025798193.2 → XP_025653978.1  cellulose synthase-like protein D3 isoform X1

    UniProtKB/TrEMBL
    A0A444Z7V7, A0A445E2C4
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1139
    PLN02248; cellulose synthase-like protein

  2. XM_025798197.2 → XP_025653982.1  cellulose synthase-like protein D3 isoform X1

    UniProtKB/TrEMBL
    A0A444Z7V7, A0A445E2C4
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1139
    PLN02248; cellulose synthase-like protein

  3. XM_025798196.2 → XP_025653981.1  cellulose synthase-like protein D3 isoform X1

    UniProtKB/TrEMBL
    A0A444Z7V7, A0A445E2C4
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1139
    PLN02248; cellulose synthase-like protein

  4. XM_025798198.2 → XP_025653983.1  cellulose synthase-like protein D3 isoform X2

    Conserved Domains (1) summary
    PLN02248
    Location:1 → 840
    PLN02248; cellulose synthase-like protein

  5. XM_025798195.2 → XP_025653980.1  cellulose synthase-like protein D3 isoform X1

    UniProtKB/TrEMBL
    A0A444Z7V7, A0A445E2C4
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1139
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
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