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LOC112747446 cellulose synthase-like protein D3 [ Arachis hypogaea (peanut) ]

Gene ID: 112747446, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112747446
Gene description
cellulose synthase-like protein D3
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112747446 in Genome Data Viewer
Location:
chromosome: Arahy.15
Exon count:
4
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.15 NC_037632.1 (1579341..1583998)

Chromosome Arahy.15 - NC_037632.1Genomic Context describing neighboring genes Neighboring gene alpha/beta hydrolase domain-containing protein 17B-like Neighboring gene probable pectate lyase 3 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene B3 domain-containing protein REM14-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037632.1 Chromosome Arahy.15 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037632.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    1579341..1583998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025795462.2 → XP_025651247.1  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    A0A444WVQ6
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1128
    PLN02248; cellulose synthase-like protein

  2. XM_025795464.2 → XP_025651249.1  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    A0A444WVQ6
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1128
    PLN02248; cellulose synthase-like protein

  3. XM_025795467.2 → XP_025651252.1  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    A0A444WVQ6
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1128
    PLN02248; cellulose synthase-like protein

  4. XM_025795463.2 → XP_025651248.1  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    A0A444WVQ6
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1128
    PLN02248; cellulose synthase-like protein

  5. XM_025795466.2 → XP_025651251.1  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    A0A444WVQ6
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1128
    PLN02248; cellulose synthase-like protein

  6. XM_025795465.2 → XP_025651250.1  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    A0A444WVQ6
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1128
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
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