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LOC112741216 soluble starch synthase 3, chloroplastic/amyloplastic [ Arachis hypogaea (peanut) ]

Gene ID: 112741216, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112741216
Gene description
soluble starch synthase 3, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112741216 in Genome Data Viewer
Location:
chromosome: Arahy.14
Exon count:
16
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.14 NC_037631.1 (6139222..6146162)

Chromosome Arahy.14 - NC_037631.1Genomic Context describing neighboring genes Neighboring gene MYB-like transcription factor ETC3 Neighboring gene ATP synthase gamma chain, chloroplastic Neighboring gene uncharacterized LOC112741217 Neighboring gene uncharacterized LOC112740239

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037631.1 Chromosome Arahy.14 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen (starch) synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 3, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037631.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    6139222..6146162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025790101.2 → XP_025645886.1  soluble starch synthase 3, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A444ZCN6
    Conserved Domains (1) summary
    PLN02316
    Location:58 → 1081
    PLN02316; synthase/transferase

  2. XM_025790103.2 → XP_025645888.1  soluble starch synthase 3, chloroplastic/amyloplastic isoform X2

    Conserved Domains (1) summary
    cl28204
    Location:1 → 794
    GlgA; Glycogen synthase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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