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LOC112722626 rhamnogalacturonan I rhamnosyltransferase 1 [ Arachis hypogaea (peanut) ]

Gene ID: 112722626, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112722626
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112722626 in Genome Data Viewer
Location:
chromosome: Arahy.11
Exon count:
9
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.11 NC_037628.1 (130681336..130684853)

Chromosome Arahy.11 - NC_037628.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC112722625 Neighboring gene transcription factor BIM1 Neighboring gene zinc finger MYM-type protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037628.1 Chromosome Arahy.11 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037628.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    130681336..130684853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025773722.2 → XP_025629507.1  rhamnogalacturonan I rhamnosyltransferase 1

    UniProtKB/TrEMBL
    A0A445AZ91, A0A445EJX8
    Conserved Domains (1) summary
    cd11299
    Location:127 → 452
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

RNA

  1. XR_003162756.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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