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LOC112708217 probable xyloglucan 6-xylosyltransferase 3 [ Arachis hypogaea (peanut) ]

Gene ID: 112708217, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112708217
Gene description
probable xyloglucan 6-xylosyltransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112708217 in Genome Data Viewer
Location:
chromosome: Arahy.08
Exon count:
1
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.08 NC_037625.1 (51152067..51154089, complement)

Chromosome Arahy.08 - NC_037625.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114924371 Neighboring gene putative phospholipid-transporting ATPase 9 Neighboring gene vesicle transport v-SNARE 11-like Neighboring gene pentatricopeptide repeat-containing protein At5g61400-like Neighboring gene putative pentatricopeptide repeat-containing protein At1g74400

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037625.1 Chromosome Arahy.08 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037625.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    51152067..51154089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025760399.2 → XP_025616184.1  probable xyloglucan 6-xylosyltransferase 3

    Conserved Domains (1) summary
    PLN03182
    Location:29 → 443
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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