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LOC112706160 probable trehalose-phosphate phosphatase J [ Arachis hypogaea (peanut) ]

Gene ID: 112706160, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112706160
Gene description
probable trehalose-phosphate phosphatase J
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112706160 in Genome Data Viewer
Location:
chromosome: Arahy.08
Exon count:
10
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.08 NC_037625.1 (12717488..12719813, complement)

Chromosome Arahy.08 - NC_037625.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor RAP2-13 Neighboring gene uncharacterized LOC112706159 Neighboring gene putative uncharacterized protein DDB_G0287113 Neighboring gene inactive TPR repeat-containing thioredoxin TTL3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037625.1 Chromosome Arahy.08 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut. Nagy ED, et al. BMC Genomics, 2012 Sep 11. PMID 22967170, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables trehalose-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable trehalose-phosphate phosphatase 4; probable trehalose-phosphate phosphatase J

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037625.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    12717488..12719813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025757317.2 → XP_025613102.1  probable trehalose-phosphate phosphatase 4 isoform X1

    Conserved Domains (1) summary
    cl21460
    Location:32 → 379
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_025757318.2 → XP_025613103.1  probable trehalose-phosphate phosphatase J isoform X2

    UniProtKB/TrEMBL
    A0A445BTC1
    Conserved Domains (1) summary
    cl21460
    Location:32 → 346
    HAD_like; Haloacid Dehalogenase-like Hydrolases

RNA

  1. XR_003155660.2 RNA Sequence

Nucleotide Protein
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