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LOC112703167 probable trehalose-phosphate phosphatase J [ Arachis hypogaea (peanut) ]

Gene ID: 112703167, updated on 22-Oct-2023

Summary

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Gene symbol
LOC112703167
Gene description
probable trehalose-phosphate phosphatase J
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
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Genomic context

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See LOC112703167 in Genome Data Viewer
Location:
chromosome: Arahy.07
Exon count:
10
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.07 NC_037624.1 (56871779..56875755, complement)

Chromosome Arahy.07 - NC_037624.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112703166 Neighboring gene NDR1/HIN1-like protein 13 Neighboring gene uncharacterized LOC112703168 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037624.1 Chromosome Arahy.07 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables trehalose-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable trehalose-phosphate phosphatase J

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037624.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    56871779..56875755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025754501.2 → XP_025610286.1  probable trehalose-phosphate phosphatase J

    Conserved Domains (1) summary
    cl21460
    Location:36 → 343
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

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