U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC112702106 hydroxyproline O-arabinosyltransferase 3 [ Arachis hypogaea (peanut) ]

Gene ID: 112702106, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC112702106
Gene description
hydroxyproline O-arabinosyltransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Arachis hypogaea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC112702106 in Genome Data Viewer
Location:
chromosome: Arahy.07
Exon count:
12
Annotation release Status Assembly Chr Location
101 current arahy.Tifrunner.gnm1.KYV3 (GCF_003086295.2) Arahy.07 NC_037624.1 (3841290..3857021)

Chromosome Arahy.07 - NC_037624.1Genomic Context describing neighboring genes Neighboring gene AT-hook motif nuclear-localized protein 17 Neighboring gene replication protein A 70 kDa DNA-binding subunit C-like Neighboring gene protein SMG7 Neighboring gene uncharacterized LOC112702108 Neighboring gene rho GTPase-activating protein 7

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037624.1 Chromosome Arahy.07 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. Chopra R, et al. PLoS One, 2014. PMID 25551607, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hydroxyproline O-arabinosyltransferase 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Arachis hypogaea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

Genomic

  1. NC_037624.1 Reference arahy.Tifrunner.gnm1.KYV3 Primary Assembly

    Range
    3841290..3857021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025753018.2 → XP_025608803.1  hydroxyproline O-arabinosyltransferase 3 isoform X1

  2. XM_025753017.2 → XP_025608802.1  hydroxyproline O-arabinosyltransferase 3 isoform X1

  3. XM_025753016.2 → XP_025608801.1  hydroxyproline O-arabinosyltransferase 3 isoform X1

  4. XM_025753019.2 → XP_025608804.1  hydroxyproline O-arabinosyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A445C422
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases