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LOC112685494 glutamate receptor ionotropic, NMDA 1-like [ Sipha flava (yellow sugarcane aphid) ]

Gene ID: 112685494, updated on 21-Dec-2023

Summary

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Gene symbol
LOC112685494
Gene description
glutamate receptor ionotropic, NMDA 1-like
See related
EnsemblRapid:LOC112685494
Gene type
protein coding
RefSeq status
MODEL
Organism
Sipha flava
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Sipha
Also known as
GRIN3A_0; Glutamate
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current YSA_version1 (GCF_003268045.1) Unplaced Scaffold NW_020271724.1 (1403716..1612510, complement)

NW_020271724.1Genomic Context describing neighboring genes Neighboring gene UDP-glucuronosyltransferase 2B2-like Neighboring gene RAS oncogene family member Rab3 Neighboring gene uncharacterized LOC112685698 Neighboring gene uncharacterized LOC112686198

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020271724 Unplaced Scaffold Reference YSA_version1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NMDA glutamate receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ionotropic glutamate receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic transmission, glutamatergic IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate receptor ionotropic, NMDA 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sipha flava Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YSA_version1

Genomic

  1. NW_020271724.1 Reference YSA_version1

    Range
    1403716..1612510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025557424.1 → XP_025413209.1  glutamate receptor ionotropic, NMDA 1-like isoform X3

    UniProtKB/TrEMBL
    A0A2S2R1P9, A0A8B8FQJ7
    Related
    XP_025413209.1, XM_025557424.1
    Conserved Domains (2) summary
    cl10011
    Location:87 → 376
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:408 → 798
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

  2. XM_025557419.1 → XP_025413204.1  glutamate receptor ionotropic, NMDA 1-like isoform X2

    UniProtKB/TrEMBL
    A0A2S2R1P9, A0A8B8FQJ2
    Related
    XP_025413204.1, XM_025557419.1
    Conserved Domains (2) summary
    cl10011
    Location:89 → 378
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:410 → 800
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

  3. XM_025557414.1 → XP_025413199.1  glutamate receptor ionotropic, NMDA 1-like isoform X1

    UniProtKB/TrEMBL
    A0A2S2R1P9, A0A8B8FQI7
    Related
    XP_025413199.1, XM_025557414.1
    Conserved Domains (2) summary
    cl10011
    Location:96 → 385
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily
    cl21456
    Location:417 → 807
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
Nucleotide Protein
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