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ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 [ Canis lupus dingo (dingo) ]

Gene ID: 112678048, updated on 19-Jun-2024

Summary

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Gene symbol
ORMDL2
Gene description
ORMDL sphingolipid biosynthesis regulator 2
See related
Ensembl:ENSCAFG00020026106
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ORMDL2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 10 NC_064252.1 (456429..465070)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 10 Unlocalized Scaffold NW_023365144.1 (972827..982388)

Chromosome 10 - NC_064252.1Genomic Context describing neighboring genes Neighboring gene growth differentiation factor 11 Neighboring gene SAP domain containing ribonucleoprotein Neighboring gene uncharacterized LOC112678049 Neighboring gene DnaJ heat shock protein family (Hsp40) member C14 Neighboring gene transmembrane protein 198-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular sphingolipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ORM1-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064252.1 Reference ASM325472v2

    Range
    456429..465070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035696288.2 → XP_035552181.1  ORM1-like protein 2 isoform X2

  2. XM_049115092.1 → XP_048971049.1  ORM1-like protein 2 isoform X1

  3. XM_025477096.3 → XP_025332881.1  ORM1-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0LK44, A0A8C0N705, A0A8C0QW24, A0A8I3N0C8
    Related
    ENSCAFP00020033633.1
    Conserved Domains (1) summary
    pfam04061
    Location:11 → 146
    ORMDL; ORMDL family

RNA

  1. XR_007413332.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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