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PTGDS prostaglandin D2 synthase [ Canis lupus dingo (dingo) ]

Gene ID: 112677471, updated on 10-Oct-2024

Summary

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Gene symbol
PTGDS
Gene description
prostaglandin D2 synthase
See related
Ensembl:ENSCAFG00020002853
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PTGDS in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 9 NC_064251.1 (49891958..49895321, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 9 Unlocalized Scaffold NW_023365136.1 (50621927..50625174, complement)

Chromosome 9 - NC_064251.1Genomic Context describing neighboring genes Neighboring gene PAXX non-homologous end joining factor Neighboring gene lipocalin like 1 Neighboring gene lipocalin 12 Neighboring gene complement C8 gamma chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prostaglandin-H2 D-isomerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064251.1 Reference ASM325472v2

    Range
    49891958..49895321 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049114292.1 → XP_048970249.1  prostaglandin-H2 D-isomerase isoform X1

  2. XM_025475900.3 → XP_025331685.1  prostaglandin-H2 D-isomerase isoform X2

    UniProtKB/Swiss-Prot
    Q9XS65
    UniProtKB/TrEMBL
    A0A8C0JNM0, A0A8C0M732
    Related
    ENSCAFP00020003368.1
    Conserved Domains (1) summary
    cd19419
    Location:30 → 187
    lipocalin_L-PGDS; lipocalin-type prostaglandin D synthase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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