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ABO ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase [ Canis lupus dingo (dingo) ]

Gene ID: 112677406, updated on 10-Oct-2024

Summary

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Gene symbol
ABO
Gene description
ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase
See related
Ensembl:ENSCAFG00020001189
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ABO in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 9 NC_064251.1 (50989595..50999551, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 9 Unlocalized Scaffold NW_023365136.1 (51719589..51729399, complement)

Chromosome 9 - NC_064251.1Genomic Context describing neighboring genes Neighboring gene beta-lactoglobulin-2 Neighboring gene major allergen Can f 1 Neighboring gene histo-blood group ABO system transferase 1-like Neighboring gene surfeit 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histo-blood group ABO system transferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064251.1 Reference ASM325472v2

    Range
    50989595..50999551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025475705.3 → XP_025331490.3  histo-blood group ABO system transferase isoform X2

  2. XM_025475704.3 → XP_025331489.3  histo-blood group ABO system transferase isoform X1

    UniProtKB/TrEMBL
    A0A8C0JIS5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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