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DGCR2 DiGeorge syndrome critical region gene 2 [ Canis lupus dingo (dingo) ]

Gene ID: 112676988, updated on 10-Oct-2024

Summary

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Gene symbol
DGCR2
Gene description
DiGeorge syndrome critical region gene 2
See related
Ensembl:ENSCAFG00020010588
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See DGCR2 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
17
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 26 NC_064268.1 (29304917..29402935)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 26 Unlocalized Scaffold NW_023365211.1 (31300682..31419270)

Chromosome 26 - NC_064268.1Genomic Context describing neighboring genes Neighboring gene ess-2 splicing factor homolog Neighboring gene testis specific serine kinase 2 Neighboring gene testis specific serine kinase 1B Neighboring gene carbonic anhydrase 15-like Neighboring gene protein FAM246A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integral membrane protein DGCR2/IDD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064268.1 Reference ASM325472v2

    Range
    29304917..29402935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025474872.3 → XP_025330657.1  integral membrane protein DGCR2/IDD isoform X5

    UniProtKB/TrEMBL
    A0A8C0P9H6, A0A8I3Q393, A0A8P0NGD0, A0A8P0SVM4
    Conserved Domains (3) summary
    cd03599
    Location:108 → 260
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:264 → 322
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:23 → 59
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

  2. XM_049101889.1 → XP_048957846.1  integral membrane protein DGCR2/IDD isoform X6

  3. XM_025474880.3 → XP_025330665.1  integral membrane protein DGCR2/IDD isoform X7

    UniProtKB/TrEMBL
    A0A8I3Q393, A0A8P0SVM4
    Conserved Domains (3) summary
    cd03599
    Location:90 → 242
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:246 → 304
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:5 → 41
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

  4. XM_035706620.2 → XP_035562513.2  integral membrane protein DGCR2/IDD isoform X6

  5. XM_049101890.1 → XP_048957847.1  integral membrane protein DGCR2/IDD isoform X6

  6. XM_025474867.3 → XP_025330652.1  integral membrane protein DGCR2/IDD isoform X1

    UniProtKB/TrEMBL
    A0A8C0PCH5, A0A8I3Q393, A0A8P0SVM4
    Conserved Domains (3) summary
    cd03599
    Location:133 → 285
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:289 → 347
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:48 → 84
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

  7. XM_025474868.3 → XP_025330653.1  integral membrane protein DGCR2/IDD isoform X2

    UniProtKB/TrEMBL
    A0A8I3Q5Q8, A0A8P0PMG9
    Conserved Domains (3) summary
    cd03599
    Location:130 → 282
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:286 → 344
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:48 → 84
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

  8. XM_025474869.3 → XP_025330654.1  integral membrane protein DGCR2/IDD isoform X3

    UniProtKB/TrEMBL
    A0A8C0T2I1, A0A8I3Q393, A0A8P0SVM4
    Conserved Domains (3) summary
    cd03599
    Location:115 → 267
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:271 → 329
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

  9. XM_025474871.3 → XP_025330656.1  integral membrane protein DGCR2/IDD isoform X4

    UniProtKB/TrEMBL
    A0A8C0KE59, A0A8I3Q5Q8, A0A8P0PMG9
    Related
    ENSCAFP00020013179.1
    Conserved Domains (3) summary
    cd03599
    Location:112 → 264
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:268 → 326
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

  10. XM_025474882.3 → XP_025330667.1  integral membrane protein DGCR2/IDD isoform X8

    UniProtKB/TrEMBL
    A0A8I3Q393, A0A8P0SVM4
    Conserved Domains (2) summary
    cd03599
    Location:74 → 226
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:230 → 291
    VWC; von Willebrand factor (vWF) type C domain

  11. XM_025474883.3 → XP_025330668.1  integral membrane protein DGCR2/IDD isoform X9

    UniProtKB/TrEMBL
    A0A8I3Q5Q8, A0A8I3SCK8, A0A8P0PMG9, A0A8P0TSM1
    Conserved Domains (2) summary
    cd03599
    Location:71 → 223
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:227 → 288
    VWC; von Willebrand factor (vWF) type C domain

  12. XM_049101888.1 → XP_048957845.1  integral membrane protein DGCR2/IDD isoform X6

  13. XM_049101891.1 → XP_048957848.1  integral membrane protein DGCR2/IDD isoform X6

Nucleotide Protein
Heading Accession and Version

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