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SDC4 syndecan 4 [ Canis lupus dingo (dingo) ]

Gene ID: 112674016, updated on 15-Mar-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
See related
Ensembl:ENSCAFG00020013897
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 24 NC_064266.1 (32702799..32722909, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 24 Unlocalized Scaffold NW_023365209.1 (32948193..32968303, complement)

Chromosome 24 - NC_064266.1Genomic Context describing neighboring genes Neighboring gene matrilin 4 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene SYS1 golgi trafficking protein Neighboring gene TP53 target 5 Neighboring gene dysbindin domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064266.1 Reference ASM325472v2

    Range
    32702799..32722909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025470205.3 → XP_025325990.1  syndecan-4

    UniProtKB/TrEMBL
    A0A8C0KIN2, A0A8C0TU12, A0A8I3NWG4
    Related
    ENSCAFP00020017359.1
    Conserved Domains (1) summary
    pfam01034
    Location:143 → 200
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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