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UXS1 UDP-glucuronate decarboxylase 1 [ Canis lupus dingo (dingo) ]

Gene ID: 112669648, updated on 15-Mar-2024

Summary

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Gene symbol
UXS1
Gene description
UDP-glucuronate decarboxylase 1
See related
Ensembl:ENSCAFG00020010424
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See UXS1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
15
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 10 NC_064252.1 (38151087..38244553)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 10 Unlocalized Scaffold NW_023365144.1 (39045974..39139143)

Chromosome 10 - NC_064252.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC118350121 Neighboring gene ECRG4 augurin precursor Neighboring gene uncharacterized LOC112675112

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables UDP-glucuronate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronic acid decarboxylase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064252.1 Reference ASM325472v2

    Range
    38151087..38244553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025462909.3 → XP_025318694.1  UDP-glucuronic acid decarboxylase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QGD0, A0A8C0RQV7, A0A8I3RV64
    Conserved Domains (2) summary
    cd05230
    Location:94 → 397
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
    pfam11803
    Location:4 → 83
    UXS1_N; UDP-glucuronate decarboxylase N-terminal

  2. XM_025462916.3 → XP_025318701.1  UDP-glucuronic acid decarboxylase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KBH5, A0A8C0QGD0
    Related
    ENSCAFP00020012939.1
    Conserved Domains (2) summary
    cd05230
    Location:89 → 392
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
    pfam11803
    Location:4 → 78
    UXS1_N; UDP-glucuronate decarboxylase N-terminal

  3. XM_049115386.1 → XP_048971343.1  UDP-glucuronic acid decarboxylase 1 isoform X3

Nucleotide Protein
Heading Accession and Version

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