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SMPD1 sphingomyelin phosphodiesterase 1 [ Canis lupus dingo (dingo) ]

Gene ID: 112667550, updated on 15-Mar-2024

Summary

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Gene symbol
SMPD1
Gene description
sphingomyelin phosphodiesterase 1
See related
Ensembl:ENSCAFG00020009556
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SMPD1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 21 NC_064263.1 (30189144..30193773)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 21 Unlocalized Scaffold NW_023365195.1 (30755287..30759914)

Chromosome 21 - NC_064263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112667546 Neighboring gene caveolae associated protein 3 Neighboring gene amyloid beta precursor protein binding family B member 1 Neighboring gene uncharacterized LOC112667391

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064263.1 Reference ASM325472v2

    Range
    30189144..30193773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025459314.3 → XP_025315099.1  sphingomyelin phosphodiesterase

    UniProtKB/TrEMBL
    A0A8C0K937, A0A8C0MWB3, A0A8I3RTW7
    Related
    ENSCAFP00020011874.1
    Conserved Domains (2) summary
    smart00741
    Location:81 → 154
    SapB; Saposin (B) Domains
    cd00842
    Location:195 → 490
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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