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POLR2D RNA polymerase II subunit D [ Canis lupus dingo (dingo) ]

Gene ID: 112652413, updated on 6-Jun-2024

Summary

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Gene symbol
POLR2D
Gene description
RNA polymerase II subunit D
See related
Ensembl:ENSCAFG00020003617
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See POLR2D in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 19 NC_064261.1 (23614106..23634011)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 19 Unlocalized Scaffold NW_023365186.1 (24318937..24338844)

Chromosome 19 - NC_064261.1Genomic Context describing neighboring genes Neighboring gene archaemetzincin-2-like Neighboring gene uncharacterized LOC125753033 Neighboring gene AMMECR1 like Neighboring gene uncharacterized LOC125753034 Neighboring gene WD repeat domain 33 Neighboring gene U6 spliceosomal RNA Neighboring gene isochorismatase domain-containing protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus in response to heat stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064261.1 Reference ASM325472v2

    Range
    23614106..23634011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025435942.3 → XP_025291727.1  DNA-directed RNA polymerase II subunit RPB4 isoform X2

    UniProtKB/TrEMBL
    A0A8C0JTP5, A0A8C0T6R7, A0A8I3P8V7
    Related
    ENSCAFP00020004386.1
    Conserved Domains (1) summary
    smart00657
    Location:24 → 141
    RPOL4c; DNA-directed RNA-polymerase II subunit

  2. XM_049097217.1 → XP_048953174.1  DNA-directed RNA polymerase II subunit RPB4 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T3Q6

RNA

  1. XR_003131432.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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